Dataset / Tabular

Genetic data and the linkage map of Seri/Babax population

author(s) Liu, Caiyun - Sukumaran, Sivakumar - Reynolds, Matthew
from International Maize and Wheat Improvement Center (CIMMYT)
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themes
regions
  • South-Eastern Asia
  • Asia
  • World
  • Eastern Asia
  • Southern Europe
  • Europe
  • Southern Asia
  • Eastern Africa
  • Sub-Saharan Africa
  • Africa
  • Southern Africa
  • Eastern Europe
  • South America
  • Latin America and the Caribbean
  • Americas
  • Central America
  • Western Asia
  • Western Europe
  • Northern America
citation

Liu, Caiyun; Sukumaran, Sivakumar; Reynolds, Matthew, 2019, "Genetic data and the linkage map of Seri/Babax population", https://hdl.handle.net/11529/10548196, CIMMYT Research Data & Software Repository Network, V1

Publications and datasets provided via GARDIAN

Abstract

These datasets include an updated linkage map for the Seri/Babax RIL population and the raw genotype data we used to construct the map. (1) We updated the genetic map of Seri/Babax population with 1748 non-redundant markers (1165 90K SNPs, 207 DArTseq SNPs, 183 AFLP, 111 DArT array, and 82 SSR). The updated map was 5576.5 cM in length with 31 linkage groups covering the 21 wheat chromosomes. The updated map has a better genome coverage, especially in D genome, and higher density than in earlier maps; and also shows a good collinearity with the IWGSC RefSeq v1.0 genome. The new linkage map can provide a useful genomic resource for further genetic analyses of important traits in the Seri/Babax population. (2) We also uploaded the raw genotyping data of 6470 markers (5386 90K SNPs, 609 DArTseq SNPs, 211 AFLP, 120 SSR, 144 DArT) we used to construct the map. Partners can download the raw data and reconstruct the map by adding new genotyping data, or through different methods and software for better improvement of the Seri/Babax genetic map.

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